Phylogenetic Trees
Selected References :
Chlamydiae Website: http://www.chlamydiae.com
Corsaro,D., Valassina,M., & Venditti,D. (2003). Increasing diversity within Chlamydiae. Crit Rev.Microbiol., 29(1), 37-78.
Corsaro,D. & Venditti,D. (2004). Emerging chlamydial infections. Crit Rev.Microbiol., 30(2), 75-106.
Everett,K.D., Bush,R.M., & Andersen,A.A. (1999a). Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms. Int.J.Syst.Bacteriol., 49 Pt 2, 415-440.
Everett,K.D., Hornung,L.J., & Andersen,A.A. (1999b). Rapid detection of the Chlamydiaceae and other families in the order Chlamydiales: three PCR tests. Journal of Clinical Microbiology, 37(3), 575-580.
Greub,G. & Raoult,D. (2002). Parachlamydiaceae: potential emerging pathogens. Emerg.Infect.Dis., 8(6), 625-630.
Griffiths,E. & Gupta,R.S. (2001). The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga-Flavobacterium-Bacteriodes division. Microbiology, 147, 2611-2622. [PDF]
Griffiths,E. & Gupta,R.S. (2002). Protein signatures distinctive of chlamydial species: Horizontal transfer of cell wall biosynthesis genes glmU from Archaebacteria to Chlamydiae, and murA between Chlamydiae and Streptomyces. Microbiology, 148, 2541-2549.
Griffiths,E. & Gupta,R.S. (2006). Lateral transfers of serine hydroxymethyltransferase (glyA) and UDP-N-acetylglucosamine enolpyruvyl transferase (murA) genes from free-living Actinobacteria to the parasitic chlamydiae. J.Mol.Evol., 63(2), 283-296. [PDF]
Griffiths,E., Petrich,A., & Gupta,R.S. (2005). Conserved Indels in Essential Proteins that are Distinctive Characteristics of Chlamydiales and Provide Novel Means for Their Identification. Microbiology, 151: 2647-2657. [PDF]
Griffiths , E., Ventresca, M.S. and Gupta, R.S. (2006) BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species. BMC Genomics, 14, 7. [PDF]
Hatch,T. (1998). Chlamydia: old ideas crushed, new mysteries bared. Science, 282, 638-639.
Horn,M., Collingro,A., Schmitz-Esser,S..et.al. (2004). Illuminating the evolutionary history of chlamydiae. Science, 304(5671), 728-730.
Horn,M. & Wagner,M. (2004). Bacterial endosymbionts of free-living amoebae. J.Eukaryot.Microbiol., 51(5), 509-514.
Kahane,S., Platzner,N., Dvoskin,B., Itzhaki,A., & Friedman,M.G. (2004). Evidence for the presence of Simkania negevensis in drinking water and in reclaimed wastewater in Israel. Appl.Environ.Microbiol., 70(6), 3346-3351.
Kalayoglu,M.V. & Byrne,G.I. (2001). Chlamydia. InM.Dworkin (Ed.), The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, 3rd edition, release 3.7, http://link.springer-ny.com/link/service/books/10125/. New York: Springer-Verlag.
Kalman,S., Mitchell,W., Marathe,R..et.al. (1999). Comparative genomes of Chlamydia pneumoniae and C. trachomatis. Nat.Genet., 21(4), 385-389.
Ossewaarde,J.M. & Meijer,A. (1999). Molecular evidence for the existence of additional members of the order Chlamydiales. Microbiology, 145 ( Pt 2), 411-417.
Read,T.D., Brunham,R.C., Shen,C..et.al. (2000). Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Research, 28(6), 1397-1406.
Read,T.D., Myers,G.S.A., Brunham,R.C..et.al. (2003). Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae. Nucleic Acids Research, 31(8), 2134-2147.
Stephens,R.S., Kalman,S., Lammel,C..et.al. (1998). Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science, 282, 754-759.
Citation for this webpage:
Bacterial (Prokaryotic) Phylogeny Webpage (March 2006). http://www.bacterialphylogeny.com/index.html